PyVCF - A Variant Call Format Parser for Python

Contents:

• Introduction
• API
  • vcf.Reader
  • vcf.Writer
  • vcf.model._Record
  • vcf.model._Call
  • vcf.model._AltRecord
  • vcf.model._Substitution
  • vcf.model._SV
  • vcf.model._SingleBreakend
  • vcf.model._Breakend
• Filtering VCF files
  • The filter script: vcf_filter.py
  • Existing Filters
  • Adding a filter
  • The filter base class: vcf.filters.Base
• Utilities
  • Simultaneously iterate two or more files
  • Trim common suffix
  • vcf_melt
• Development
  • Running tests
• Changes
  • 0.6.7 Release
  • 0.6.6 Release
  • 0.6.5 Release
  • 0.6.4 Release
  • 0.6.3 Release
  • 0.6.2 Release
  • 0.6.1 Release
  • 0.6.0 Release
  • 0.5.0 Release
  • 0.4.6 Release
  • 0.4.5 Release
  • 0.4.4 Release
  • 0.4.3 Release
  • 0.4.2 Release
  • 0.4.1 Release
  • 0.4.0 Release
  • 0.3.0 Release
  • 0.2.2 Release
  • 0.2.1 Release
  • 0.2 Release
  • 0.1 Release
• Contributions

Indices and tables

• Index
• Module Index
• Search Page