PyVCF
latest
  • Introduction
  • API
  • Filtering VCF files
  • Utilities
  • Development
  • Changes
  • Contributions
PyVCF
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  • PyVCF - A Variant Call Format Parser for Python
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PyVCF - A Variant Call Format Parser for Python¶

Contents:

  • Introduction
  • API
    • vcf.Reader
    • vcf.Writer
    • vcf.model._Record
    • vcf.model._Call
    • vcf.model._AltRecord
    • vcf.model._Substitution
    • vcf.model._SV
    • vcf.model._SingleBreakend
    • vcf.model._Breakend
  • Filtering VCF files
    • The filter script: vcf_filter.py
    • Existing Filters
    • Adding a filter
    • The filter base class: vcf.filters.Base
  • Utilities
    • Simultaneously iterate two or more files
    • Trim common suffix
    • vcf_melt
  • Development
    • Running tests
  • Changes
    • 0.6.7 Release
    • 0.6.6 Release
    • 0.6.5 Release
    • 0.6.4 Release
    • 0.6.3 Release
    • 0.6.2 Release
    • 0.6.1 Release
    • 0.6.0 Release
    • 0.5.0 Release
    • 0.4.6 Release
    • 0.4.5 Release
    • 0.4.4 Release
    • 0.4.3 Release
    • 0.4.2 Release
    • 0.4.1 Release
    • 0.4.0 Release
    • 0.3.0 Release
    • 0.2.2 Release
    • 0.2.1 Release
    • 0.2 Release
    • 0.1 Release
  • Contributions

Indices and tables¶

  • Index
  • Module Index
  • Search Page
Next

© Copyright 2012, James Casbon, @jdoughertyii. Revision 476169cd.

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